STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE58534.1DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (234 aa)    
Predicted Functional Partners:
SDE58558.1
Signal transduction histidine kinase.
  0.997
SDE58611.1
Putative ABC transport system permease protein.
 
     0.937
SDD96227.1
Two-component system, OmpR family, bacitracin resistance sensor histidine kinase BceS.
 
  0.902
SDD96038.1
Signal transduction histidine kinase.
 
 0.889
SDD91108.1
Signal transduction histidine kinase.
 
  0.889
SDD94691.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  0.881
SDE58583.1
Putative ABC transport system ATP-binding protein.
 
     0.878
SDE61928.1
Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR.
 
  0.857
SDE58214.1
Two-component system, OmpR family, sensor histidine kinase BaeS.
 
  0.850
SDE59659.1
Signal transduction histidine kinase.
 
  0.841
Your Current Organism:
Bhargavaea beijingensis
NCBI taxonomy Id: 426756
Other names: B. beijingensis, Bacillus beijingensis, Bacillus beijingensis Qiu et al. 2009, Bacillus sp. ge09, Bacillus sp. ge10, Bhargavaea beijingensis (Qiu et al. 2009) Verma et al. 2012, CGMCC 1.6762, DSM 19037, strain ge10
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