STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI66193.1Two-component system, OmpR family, sensor histidine kinase ResE. (592 aa)    
Predicted Functional Partners:
SEI66219.1
Two-component system, OmpR family, response regulator ResD.
 0.991
SEJ31621.1
Two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP.
 0.967
SEJ52874.1
Tetratricopeptide repeat-containing protein.
  
 0.951
SEI85514.1
Response regulator receiver domain-containing protein.
 
 0.908
SEJ55839.1
Two-component system, OmpR family, response regulator VicR.
 0.881
SEJ79611.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.880
SEJ01149.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.843
SEI97761.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.834
SEI96438.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.833
SEI79269.1
Purine-cytosine permease.
 
      0.827
Your Current Organism:
Bhargavaea ginsengi
NCBI taxonomy Id: 426757
Other names: B. ginsengi, Bacillus ginsengi, Bacillus ginsengi Qiu et al. 2009, Bacillus sp. ge14, Bacillus sp. ge15, Bhargavaea ginsengi (Qiu et al. 2009) Verma et al. 2012, CGMCC 1.6763, DSM 19038, strain ge14
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