Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEI64157.1 | SEJ22953.1 | SAMN04488127_0055 | SAMN04488127_1333 | DNA replication protein. | Hypothetical protein. | 0.616 |
SEI64157.1 | SEJ31297.1 | SAMN04488127_0055 | SAMN04488127_1591 | DNA replication protein. | Primosomal protein DnaI. | 0.829 |
SEI64157.1 | SEJ31325.1 | SAMN04488127_0055 | SAMN04488127_1592 | DNA replication protein. | Replicative DNA helicase loader DnaB. | 0.715 |
SEI64157.1 | SEJ62167.1 | SAMN04488127_0055 | SAMN04488127_2316 | DNA replication protein. | Competence protein ComFA. | 0.688 |
SEI64157.1 | SEJ83455.1 | SAMN04488127_0055 | SAMN04488127_2975 | DNA replication protein. | Uncharacterized protein YutD. | 0.563 |
SEI64157.1 | gpsB | SAMN04488127_0055 | SAMN04488127_0048 | DNA replication protein. | DivIVA domain-containing protein; Divisome component that associates with the complex late in its assembly, after the Z-ring is formed, and is dependent on DivIC and PBP2B for its recruitment to the divisome. Together with EzrA, is a key component of the system that regulates PBP1 localization during cell cycle progression. Its main role could be the removal of PBP1 from the cell pole after pole maturation is completed. Also contributes to the recruitment of PBP1 to the division complex. Not essential for septum formation. | 0.454 |
SEI64157.1 | rpoE | SAMN04488127_0055 | SAMN04488127_2417 | DNA replication protein. | DNA-directed RNA polymerase subunit delta; Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; Belongs to the RpoE family. | 0.672 |
SEI67094.1 | SEJ31297.1 | SAMN04488127_0142 | SAMN04488127_1591 | Hypothetical protein. | Primosomal protein DnaI. | 0.636 |
SEI67094.1 | SEJ31325.1 | SAMN04488127_0142 | SAMN04488127_1592 | Hypothetical protein. | Replicative DNA helicase loader DnaB. | 0.716 |
SEI67094.1 | SEJ62167.1 | SAMN04488127_0142 | SAMN04488127_2316 | Hypothetical protein. | Competence protein ComFA. | 0.522 |
SEI67094.1 | gpsB | SAMN04488127_0142 | SAMN04488127_0048 | Hypothetical protein. | DivIVA domain-containing protein; Divisome component that associates with the complex late in its assembly, after the Z-ring is formed, and is dependent on DivIC and PBP2B for its recruitment to the divisome. Together with EzrA, is a key component of the system that regulates PBP1 localization during cell cycle progression. Its main role could be the removal of PBP1 from the cell pole after pole maturation is completed. Also contributes to the recruitment of PBP1 to the division complex. Not essential for septum formation. | 0.762 |
SEI67094.1 | rpoE | SAMN04488127_0142 | SAMN04488127_2417 | Hypothetical protein. | DNA-directed RNA polymerase subunit delta; Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; Belongs to the RpoE family. | 0.465 |
SEJ22953.1 | SEI64157.1 | SAMN04488127_1333 | SAMN04488127_0055 | Hypothetical protein. | DNA replication protein. | 0.616 |
SEJ22953.1 | SEJ31297.1 | SAMN04488127_1333 | SAMN04488127_1591 | Hypothetical protein. | Primosomal protein DnaI. | 0.635 |
SEJ22953.1 | SEJ31325.1 | SAMN04488127_1333 | SAMN04488127_1592 | Hypothetical protein. | Replicative DNA helicase loader DnaB. | 0.653 |
SEJ22953.1 | SEJ62167.1 | SAMN04488127_1333 | SAMN04488127_2316 | Hypothetical protein. | Competence protein ComFA. | 0.580 |
SEJ22953.1 | SEJ83455.1 | SAMN04488127_1333 | SAMN04488127_2975 | Hypothetical protein. | Uncharacterized protein YutD. | 0.621 |
SEJ22953.1 | gpsB | SAMN04488127_1333 | SAMN04488127_0048 | Hypothetical protein. | DivIVA domain-containing protein; Divisome component that associates with the complex late in its assembly, after the Z-ring is formed, and is dependent on DivIC and PBP2B for its recruitment to the divisome. Together with EzrA, is a key component of the system that regulates PBP1 localization during cell cycle progression. Its main role could be the removal of PBP1 from the cell pole after pole maturation is completed. Also contributes to the recruitment of PBP1 to the division complex. Not essential for septum formation. | 0.494 |
SEJ22953.1 | rpoE | SAMN04488127_1333 | SAMN04488127_2417 | Hypothetical protein. | DNA-directed RNA polymerase subunit delta; Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; Belongs to the RpoE family. | 0.750 |
SEJ31297.1 | SEI64157.1 | SAMN04488127_1591 | SAMN04488127_0055 | Primosomal protein DnaI. | DNA replication protein. | 0.829 |
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