STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEJ52008.1Uncharacterized membrane protein YckC, RDD family. (184 aa)    
Predicted Functional Partners:
SEI82814.1
Hypothetical protein.
  
     0.623
SEJ51980.1
Amidase.
       0.581
SEJ84939.1
Ribosomal 50S subunit-recycling heat shock protein, contains S4 domain.
   
    0.461
SEI99365.1
NitT/TauT family transport system substrate-binding protein.
  
     0.429
SEI79637.1
Putative AdoMet-dependent methyltransferase; Could be a S-adenosyl-L-methionine-dependent methyltransferase.
  
     0.412
SEI79040.1
Hypothetical protein.
  
     0.410
SEJ51927.1
Putative membrane protein.
  
    0.409
SEJ63350.1
Hypothetical protein.
  
     0.408
Your Current Organism:
Bhargavaea ginsengi
NCBI taxonomy Id: 426757
Other names: B. ginsengi, Bacillus ginsengi, Bacillus ginsengi Qiu et al. 2009, Bacillus sp. ge14, Bacillus sp. ge15, Bhargavaea ginsengi (Qiu et al. 2009) Verma et al. 2012, CGMCC 1.6763, DSM 19038, strain ge14
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