STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEJ69963.1CAAX protease self-immunity. (261 aa)    
Predicted Functional Partners:
SEJ69993.1
Ribosomal-protein-alanine N-acetyltransferase.
       0.661
SEJ62927.1
Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
     0.622
SEJ70019.1
Catechol 2,3-dioxygenase.
       0.528
SEI93555.1
Permease of the drug/metabolite transporter (DMT) superfamily.
  
    0.516
SEJ52583.1
Ribosomal protein S12 methylthiotransferase accessory factor.
  
  
 0.516
SEJ70049.1
Protein of unknown function.
       0.479
SEJ70085.1
Isopentenyldiphosphate isomerase.
       0.479
SEI95118.1
ABC-2 type transport system permease protein.
   
    0.439
SEJ52644.1
ABC-2 type transport system permease protein.
   
    0.439
SEJ70112.1
Protein of unknown function.
       0.428
Your Current Organism:
Bhargavaea ginsengi
NCBI taxonomy Id: 426757
Other names: B. ginsengi, Bacillus ginsengi, Bacillus ginsengi Qiu et al. 2009, Bacillus sp. ge14, Bacillus sp. ge15, Bhargavaea ginsengi (Qiu et al. 2009) Verma et al. 2012, CGMCC 1.6763, DSM 19038, strain ge14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.