STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEJ75091.1Hypothetical protein. (353 aa)    
Predicted Functional Partners:
SEJ47741.1
Putative NADH-flavin reductase.
   
    0.723
SEI62889.1
Protein of unknown function.
  
     0.641
selD
Selenophosphate synthase; Synthesizes selenophosphate from selenide and ATP.
 
     0.580
SEJ75120.1
ATP-binding cassette, subfamily B.
       0.523
SEJ28252.1
tRNA 2-selenouridine synthase.
 
     0.509
SEJ75139.1
Hypothetical protein.
 
     0.497
SEI71128.1
Spore coat protein A.
  
  
 0.496
SEJ85833.1
Nitrite reductase (NO-forming).
  
  
 0.496
trmB
tRNA (guanine-N7-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
   
    0.459
SEI95923.1
Hypothetical protein.
  
     0.412
Your Current Organism:
Bhargavaea ginsengi
NCBI taxonomy Id: 426757
Other names: B. ginsengi, Bacillus ginsengi, Bacillus ginsengi Qiu et al. 2009, Bacillus sp. ge14, Bacillus sp. ge15, Bhargavaea ginsengi (Qiu et al. 2009) Verma et al. 2012, CGMCC 1.6763, DSM 19038, strain ge14
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