STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A5481_03505Shikimate kinase; Catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (48 aa)    
Predicted Functional Partners:
xerD
Recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
       0.808
OAS19924.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.692
OAS26936.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.641
OAS26554.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.637
OAS20187.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.601
OAS27411.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.594
OAS26141.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.575
OAS19950.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.575
OAS24975.1
NADH oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.569
OAS17761.1
Invasion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.567
Your Current Organism:
Methylobacterium platani
NCBI taxonomy Id: 427683
Other names: JCM 14648, KCTC 12901, M. platani, Methylobacterium platani Kang et al. 2007, Methylobacterium sp. PMB02, strain PMB02
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.