STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nikENickel import ATP-binding protein NikE; With NikABCD is involved with nickel transport into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology. (262 aa)    
Predicted Functional Partners:
nikD
Nickel import ATP-binding protein NikD; With NikABCE is involved in nickel transport into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.967
nikC
Nickel ABC transporter permease subunit NikC; With NikABDE is involved in nickel transport into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.929
OAS25721.1
Nickel ABC transporter permease subunit NikB; With NikACDE is involved in nickel transport into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.884
OAS25722.1
Nickel ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.846
OAS25717.1
Hypothetical protein; Transcriptional regulator.
     
 0.806
OAS15459.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.753
OAS14434.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.744
OAS25740.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.742
OAS24421.1
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.731
OAS25625.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.719
Your Current Organism:
Methylobacterium platani
NCBI taxonomy Id: 427683
Other names: JCM 14648, KCTC 12901, M. platani, Methylobacterium platani Kang et al. 2007, Methylobacterium sp. PMB02, strain PMB02
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.