STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS76042.1Hypothetical protein; COG: COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake; Psort location: Cytoplasmic, score: 8.87. (329 aa)    
Predicted Functional Partners:
EDS76041.1
KEGG: spd:SPD_1920 2.3e-15 peptidase, S54 (rhomboid) family protein; COG: COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid); Psort location: CytoplasmicMembrane, score: 9.99.
       0.776
EDS74179.1
Ser/Thr phosphatase family protein; KEGG: hso:HS_0581 2.1e-07 icc; 3',5'-cyclic-nucleotide phosphodiesterase K03651; COG: COG1409 Predicted phosphohydrolases.
  
     0.763
EDS75075.1
Hypothetical protein; COG: COG0457 FOG: TPR repeat; Psort location: Cytoplasmic, score: 8.87.
  
    0.759
EDS76043.1
L-asparaginase, type II; KEGG: vfi:VF1527 1.1e-70 L-asparaginase K01424; COG: COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D; Psort location: Cytoplasmic, score: 9.98.
       0.748
EDS76039.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
       0.702
galU
KEGG: ctc:CTC02269 4.2e-94 UTP-glucose-1-phosphate uridylyltransferase K00963; COG: COG1210 UDP-glucose pyrophosphorylase; Psort location: Cytoplasmic, score: 8.87.
       0.702
EDS74808.1
Hypothetical protein; KEGG: saa:SAUSA300_0964 0.00026 chitinase-related protein K01183; COG: COG1426 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score: 8.87.
 
     0.664
EDS76094.1
Hypothetical protein; KEGG: bas:BUsg189 0.0064 hpt; hypoxanthine phosphoribosyltransferase K00760; COG: COG1040 Predicted amidophosphoribosyltransferases.
 
 
 0.650
EDS75475.1
DNA internalization competence protein ComEC/Rec2-like protein; KEGG: cel:ND6 0.00029 NADH dehydrogenase subunit 6 K03884; COG: COG0658 Predicted membrane metal-binding protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
  
 0.622
EDS75838.1
Bacterial peptidase A24, N-terminal domain protein; KEGG: ctc:CTC02411 1.1e-36 pilD; type IV prepilin leader peptidase pilD K02654; COG: COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.613
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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