STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS76064.1Radical SAM domain protein; KEGG: pca:Pcar_1695 3.7e-31 deoxyribonuclease, TatD family K03424; COG: COG0535 Predicted Fe-S oxidoreductases; Psort location: Cytoplasmic, score: 8.87. (214 aa)    
Predicted Functional Partners:
EDS73849.1
Hydrolase, TatD family; KEGG: bca:BCE_0037 1.9e-66 deoxyribonuclease, TatD family K03424; COG: COG0084 Mg-dependent DNase; Psort location: Cytoplasmic, score: 8.87.
     0.933
EDS76065.1
Putative pyridoxal kinase; KEGG: bfs:BF3395 1.0e-42 putative pyridoxine kinase K00868; COG: COG2240 Pyridoxal/pyridoxine/pyridoxamine kinase; Psort location: Cytoplasmic, score: 8.87.
 
     0.846
EDS76063.1
Hypothetical protein; KEGG: ldb:Ldb0200 1.6e-23 putative protein tyrosine/serine phosphatase K01104; COG: COG2365 Protein tyrosine/serine phosphatase; Psort location: Cytoplasmic, score: 8.87.
       0.616
nifJ
KEGG: fnu:FN1170 0. pyruvate-flavodoxin oxidoreductase K03737; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.533
EDS76066.1
Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
       0.514
EDS76062.1
Hypothetical protein.
       0.493
EDS75394.1
DegT/DnrJ/EryC1/StrS aminotransferase family protein; KEGG: cno:NT01CX_1463 6.9e-101 spsC; spore coat polysaccharide biosynthesis protein SpsC K01726; COG: COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Psort location: Cytoplasmic, score: 8.87; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.472
EDS75148.1
RelA/SpoT family protein; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
    
  0.442
EDS75677.1
Transcriptional regulator, AsnC family; COG: COG1522 Transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.405
EDS75946.1
Transcriptional regulator, AsnC family; COG: COG1522 Transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.405
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.