STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS76078.1Acetyltransferase, GNAT family; KEGG: sus:Acid_1436 7.8e-15 tagatose-bisphosphate aldolase K01635; COG: COG3684 Tagatose-1,6-bisphosphate aldolase; Psort location: Cytoplasmic, score: 8.87. (136 aa)    
Predicted Functional Partners:
EDS76076.1
KEGG: ctc:CTC00579 2.8e-127 sbcC; exonuclease sbcC K03546; COG: COG0419 ATPase involved in DNA repair; Psort location: Extracellular, score: 7.62.
 
     0.801
sbcD
Exonuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
       0.780
EDS75256.1
Acetyltransferase, GNAT family; KEGG: fnu:FN0104 5.1e-18 acetyltransferase K00680; COG: COG3981 Predicted acetyltransferase.
  
     0.676
proS
proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro).
       0.610
EDS75989.1
Hypothetical protein; KEGG: fnu:FN0099 4.8e-22 inorganic pyrophosphatase K01507; COG: COG0221 Inorganic pyrophosphatase.
  
    0.515
EDS76079.1
Hypothetical protein.
       0.504
EDS73792.1
Hypothetical protein; KEGG: rle:RL2023 0.00013 phaZ; putative poly(3-hydroxyalkanoate) depolymerase C precursor K01066; COG: COG4099 Predicted peptidase.
  
     0.451
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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