Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
comFAComF operon protein 1; KEGG: erw:ERWE_CDS_00310 4.1e-09 recG; ATP-dependent DNA helicase RecG K03655; COG: COG4098 Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein). (368 aa)    
Predicted Functional Partners:
EDS76094.1
Hypothetical protein; KEGG: bas:BUsg189 0.0064 hpt; hypoxanthine phosphoribosyltransferase K00760; COG: COG1040 Predicted amidophosphoribosyltransferases.
 
  
 0.925
EDS74964.1
KEGG: pen:PSEEN2333 1.1e-38 xcpR-2; type II secretion pathway protein E K01509; COG: COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB; Psort location: Cytoplasmic, score: 9.36.
   
  
 0.892
EDS74962.1
Prepilin-type cleavage/methylation N-terminal domain protein; COG: COG4537 Competence protein ComGC.
  
  
 0.831
EDS74963.1
Bacterial type II secretion system domain protein F; COG: COG1459 Type II secretory pathway, component PulF; Psort location: CytoplasmicMembrane, score: 9.99.
  
  
 0.794
EDS75476.1
COG: COG1555 DNA uptake protein and related DNA-binding proteins; Psort location: Cytoplasmic, score: 8.87.
   
  
 0.773
EDS74799.1
DnaD domain protein; KEGG: sha:SH1234 0.0065 polA; DNA polymerase I K02335; COG: COG3935 Putative primosome component and related proteins; Psort location: Cytoplasmic, score: 8.87.
  
     0.681
EDS74554.1
YbbR-like protein; COG: COG4856 Uncharacterized protein conserved in bacteria.
  
     0.632
EDS75475.1
DNA internalization competence protein ComEC/Rec2-like protein; KEGG: cel:ND6 0.00029 NADH dehydrogenase subunit 6 K03884; COG: COG0658 Predicted membrane metal-binding protein; Psort location: CytoplasmicMembrane, score: 9.99.
   
  
 0.610
EDS74803.1
DivIVA domain protein; KEGG: lwe:lwe2040 6.2e-06 cell division protein DivIVA K01549; COG: COG3599 Cell division initiation protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.603
EDS74024.1
KEGG: shn:Shewana3_3590 2.8e-17 single-strand binding protein K00655; COG: COG0629 Single-stranded DNA-binding protein.
  
  
 0.598
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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