EDS76107.1 protein (Clostridium spiroforme) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EDS76107.1

Transcriptional regulator, MarR family. (153 aa)

Predicted Functional Partners:

EDS76108.1

0.799

EDS75346.1

0.426

nifJ

0.406

bltR

0.403

Your Current Organism:

Clostridium spiroforme

NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EDS75346.1	EDS76107.1	CLOSPI_00740	CLOSPI_00072	Pyridine nucleotide-disulfide oxidoreductase; KEGG: bce:BC0791 4.5e-136 NADH dehydrogenase K00359; COG: COG0607 Rhodanese-related sulfurtransferase; Psort location: Cytoplasmic, score: 9.65; Belongs to the sulfur carrier protein TusA family.	Transcriptional regulator, MarR family.	0.426
EDS75346.1	nifJ	CLOSPI_00740	CLOSPI_00003	Pyridine nucleotide-disulfide oxidoreductase; KEGG: bce:BC0791 4.5e-136 NADH dehydrogenase K00359; COG: COG0607 Rhodanese-related sulfurtransferase; Psort location: Cytoplasmic, score: 9.65; Belongs to the sulfur carrier protein TusA family.	KEGG: fnu:FN1170 0. pyruvate-flavodoxin oxidoreductase K03737; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score: 8.87.	0.643
EDS76107.1	EDS75346.1	CLOSPI_00072	CLOSPI_00740	Transcriptional regulator, MarR family.	Pyridine nucleotide-disulfide oxidoreductase; KEGG: bce:BC0791 4.5e-136 NADH dehydrogenase K00359; COG: COG0607 Rhodanese-related sulfurtransferase; Psort location: Cytoplasmic, score: 9.65; Belongs to the sulfur carrier protein TusA family.	0.426
EDS76107.1	EDS76108.1	CLOSPI_00072	CLOSPI_00073	Transcriptional regulator, MarR family.	COG: COG1289 Predicted membrane protein; Psort location: CytoplasmicMembrane, score: 9.99.	0.799
EDS76107.1	bltR	CLOSPI_00072	CLOSPI_00071	Transcriptional regulator, MarR family.	Multidrug-efflux transporter 2 regulator; KEGG: eci:UTI89_C3737 0.00051 yhdM; Zn(II)-responsive regulator of ZntA; COG: COG4978 Transcriptional regulator, effector-binding domain/component; Psort location: Cytoplasmic, score: 8.87.	0.403
EDS76107.1	nifJ	CLOSPI_00072	CLOSPI_00003	Transcriptional regulator, MarR family.	KEGG: fnu:FN1170 0. pyruvate-flavodoxin oxidoreductase K03737; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score: 8.87.	0.406
EDS76108.1	EDS76107.1	CLOSPI_00073	CLOSPI_00072	COG: COG1289 Predicted membrane protein; Psort location: CytoplasmicMembrane, score: 9.99.	Transcriptional regulator, MarR family.	0.799
EDS76108.1	bltR	CLOSPI_00073	CLOSPI_00071	COG: COG1289 Predicted membrane protein; Psort location: CytoplasmicMembrane, score: 9.99.	Multidrug-efflux transporter 2 regulator; KEGG: eci:UTI89_C3737 0.00051 yhdM; Zn(II)-responsive regulator of ZntA; COG: COG4978 Transcriptional regulator, effector-binding domain/component; Psort location: Cytoplasmic, score: 8.87.	0.406
bltR	EDS76107.1	CLOSPI_00071	CLOSPI_00072	Multidrug-efflux transporter 2 regulator; KEGG: eci:UTI89_C3737 0.00051 yhdM; Zn(II)-responsive regulator of ZntA; COG: COG4978 Transcriptional regulator, effector-binding domain/component; Psort location: Cytoplasmic, score: 8.87.	Transcriptional regulator, MarR family.	0.403
bltR	EDS76108.1	CLOSPI_00071	CLOSPI_00073	Multidrug-efflux transporter 2 regulator; KEGG: eci:UTI89_C3737 0.00051 yhdM; Zn(II)-responsive regulator of ZntA; COG: COG4978 Transcriptional regulator, effector-binding domain/component; Psort location: Cytoplasmic, score: 8.87.	COG: COG1289 Predicted membrane protein; Psort location: CytoplasmicMembrane, score: 9.99.	0.406
bltR	nifJ	CLOSPI_00071	CLOSPI_00003	Multidrug-efflux transporter 2 regulator; KEGG: eci:UTI89_C3737 0.00051 yhdM; Zn(II)-responsive regulator of ZntA; COG: COG4978 Transcriptional regulator, effector-binding domain/component; Psort location: Cytoplasmic, score: 8.87.	KEGG: fnu:FN1170 0. pyruvate-flavodoxin oxidoreductase K03737; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score: 8.87.	0.405
nifJ	EDS75346.1	CLOSPI_00003	CLOSPI_00740	KEGG: fnu:FN1170 0. pyruvate-flavodoxin oxidoreductase K03737; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score: 8.87.	Pyridine nucleotide-disulfide oxidoreductase; KEGG: bce:BC0791 4.5e-136 NADH dehydrogenase K00359; COG: COG0607 Rhodanese-related sulfurtransferase; Psort location: Cytoplasmic, score: 9.65; Belongs to the sulfur carrier protein TusA family.	0.643
nifJ	EDS76107.1	CLOSPI_00003	CLOSPI_00072	KEGG: fnu:FN1170 0. pyruvate-flavodoxin oxidoreductase K03737; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score: 8.87.	Transcriptional regulator, MarR family.	0.406
nifJ	bltR	CLOSPI_00003	CLOSPI_00071	KEGG: fnu:FN1170 0. pyruvate-flavodoxin oxidoreductase K03737; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score: 8.87.	Multidrug-efflux transporter 2 regulator; KEGG: eci:UTI89_C3737 0.00051 yhdM; Zn(II)-responsive regulator of ZntA; COG: COG4978 Transcriptional regulator, effector-binding domain/component; Psort location: Cytoplasmic, score: 8.87.	0.405