STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS75651.1Glycosyl hydrolase family 25; KEGG: spd:SPD_1403 4.0e-13 lytC; 1,4-beta-N-acetylmuramidase, putative K01227; COG: COG1388 FOG: LysM repeat. (242 aa)    
Predicted Functional Partners:
EDS73947.1
NlpC/P60 family protein; KEGG: rha:RHA1_ro11285 4.1e-17 probable peptidase K01423; COG: COG5263 FOG: Glucan-binding domain (YG repeat); Psort location: Extracellular, score: 9.95.
   
  0.662
EDS73946.1
ErfK/YbiS/YcfS/YnhG; COG: COG5263 FOG: Glucan-binding domain (YG repeat).
 
     0.563
EDS75230.1
LysM domain protein; KEGG: aeh:Mlg_1995 5.1e-06 lytic transglycosylase, catalytic K08307; COG: COG3409 Putative peptidoglycan-binding domain-containing protein.
    
 0.544
EDS75652.1
COG: COG4420 Predicted membrane protein.
       0.465
srtB
Sortase, SrtB family; COG: COG4509 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score: 8.87.
  
     0.410
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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