STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
satDSatD protein; COG: NOG17180 non supervised orthologous group. (230 aa)    
Predicted Functional Partners:
EDS75711.1
Hypothetical protein; KEGG: bcc:BCc_107 0.0071 nuoL; NADH dehydrogenase I chain L K00329; COG: NOG17674 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
 
   
 0.957
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.698
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.685
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.637
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
   
 
 0.620
EDS75520.1
Kinase domain protein; KEGG: lmo:lmo1820 5.3e-110 similar to putative serine/threonine-specific protein kinase K08884; COG: COG2815 Uncharacterized protein conserved in bacteria; Psort location: CytoplasmicMembrane, score: 9.49.
   
 
 0.557
EDS75633.1
Hypothetical protein; KEGG: pfa:PFI0960w 0.0016 dolichyl-diphosphooligosaccharide--protein-glyco transferase,putative K00730; COG: COG2770 FOG: HAMP domain.
   
   0.530
EDS75400.1
KEGG: tcx:Tcr_1209 8.0e-07 exodeoxyribonuclease VII, large subunit K03601; COG: NOG21997 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
   
   0.530
EDS76081.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
    
  0.470
EDS74739.1
TIGR02677 family protein; KEGG: fnu:FN0522 0.0032 exonuclease SBCC K03546; COG: NOG04769 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
    
  0.470
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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