STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS75827.1Response regulator receiver domain protein; KEGG: ava:Ava_2028 2.1e-42 two component transcriptional regulator, LuxR family; COG: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; Psort location: Cytoplasmic, score: 9.65. (227 aa)    
Predicted Functional Partners:
EDS75826.1
Histidine kinase; KEGG: btl:BALH_1575 1.1e-29 sensor histidine kinase; COG: COG4585 Signal transduction histidine kinase; Psort location: CytoplasmicMembrane, score: 10.00.
 0.997
EDS75828.1
ABC transporter, solute-binding protein; KEGG: eci:UTI89_C1581 3.4e-05 ycjN; putative ABC transporter periplasmic binding protein YcjN precursor K02027; COG: COG1653 ABC-type sugar transport system, periplasmic component; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.957
EDS75825.1
Sugar-binding domain protein; KEGG: msm:MSMEG_3095 4.0e-25 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.954
EDS75831.1
KEGG: lsl:LSL_1950 3.7e-22 PTS system, mannose-specific IIC component K00890; COG: COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.857
EDS75830.1
KEGG: cac:CAC1458 2.7e-58 PTS system, fructose(mannose)-specific IIB K00890; COG: COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB.
 
     0.851
EDS75829.1
KEGG: cac:CAC1457 6.4e-34 PTS system, fructose(mannose)-specific IIA component K02744; COG: COG2893 Phosphotransferase system, mannose/fructose-specific component IIA; Psort location: Cytoplasmic, score: 8.87.
 
     0.834
EDS75832.1
KEGG: lsl:LSL_1949 1.8e-38 PTS system, mannose-specific IID component K00890; COG: COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.820
EDS75353.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
    
 0.727
EDS74712.1
KEGG: ctc:CTC00159 2.4e-36 sensory transduction protein kinase; COG: COG0642 Signal transduction histidine kinase; Psort location: Cytoplasmic, score: 9.36.
 
 0.645
EDS75824.1
LPXTG-motif cell wall anchor domain protein; KEGG: smu:SMU.78 7.2e-234 fruA; fructan hydrolase; exo-beta-D-fructosidase; fructanase, FruA K03332; COG: COG1621 Beta-fructosidases (levanase/invertase); Psort location: Cellwall, score: 9.93.
 
   
 0.630
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.