STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS75854.1DNA-binding helix-turn-helix protein; KEGG: mmo:MMOB3450 0.00033 dam; adenine-specific DNA methyltransferase K06223; COG: COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases); Psort location: Cytoplasmic, score: 8.87. (211 aa)    
Predicted Functional Partners:
EDS74470.1
Replication initiation factor; COG: COG2946 Putative phage replication protein RstA; Psort location: Cytoplasmic, score: 8.87.
  
     0.774
EDS75851.1
Site-specific recombinase, phage integrase family; COG: COG4974 Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
 
    0.628
EDS74318.1
Hypothetical protein; COG: NOG23360 non supervised orthologous group.
  
    0.602
EDS73673.1
DNA-binding helix-turn-helix protein; COG: COG2946 Putative phage replication protein RstA; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.557
EDS74317.1
Hypothetical protein; COG: NOG23360 non supervised orthologous group.
  
    0.497
EDS73671.1
DNA binding domain of tn916 integrase; COG: COG4974 Site-specific recombinase XerD; Psort location: Cytoplasmic, score: 8.87; Belongs to the 'phage' integrase family.
 
    0.491
EDS73994.1
Hypothetical protein; COG: COG3464 Transposase and inactivated derivatives.
  
     0.448
EDS75855.1
KEGG: bcz:BCZK3833 5.0e-11 transcriptional regulator, GntR family; COG: COG1725 Predicted transcriptional regulators.
  
    0.436
EDS75856.1
KEGG: hpa:HPAG1_1162 2.0e-30 ABC transporter, ATP-binding protein K06022; COG: COG1131 ABC-type multidrug transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
       0.422
EDS75857.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
       0.422
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.