STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS75863.1MATE efflux family protein; COG: COG0534 Na+-driven multidrug efflux pump; Psort location: CytoplasmicMembrane, score: 9.99. (449 aa)    
Predicted Functional Partners:
EDS73712.1
Hypothetical protein; KEGG: sat:SYN_02496 2.4e-20 cytidylate kinase K00945; COG: NOG14451 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
      0.802
EDS75864.1
Transcriptional regulator, MerR family; KEGG: eci:UTI89_C3737 4.5e-07 yhdM; Zn(II)-responsive regulator of ZntA; COG: NOG23147 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.598
EDS75865.1
Hypothetical protein; KEGG: pae:PA0196 0.0018 pntB; pyridine nucleotide transhydrogenase, beta subunit K00325; COG: COG2035 Predicted membrane protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
    0.482
EDS75862.1
CorA-like protein; COG: COG0598 Mg2+ and Co2+ transporters; Psort location: Cytoplasmic, score: 8.87.
  
    0.446
EDS75869.1
MATE efflux family protein; COG: COG0534 Na+-driven multidrug efflux pump; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.445
rplO
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
    
   0.436
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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