STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS75882.1TrkA N-terminal domain protein; COG: COG0569 K+ transport systems, NAD-binding component; Psort location: Cytoplasmic, score: 8.87. (222 aa)    
Predicted Functional Partners:
EDS75881.1
TrkA N-terminal domain protein; KEGG: sag:SAG0407 0.0062 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) K00057; COG: COG0569 K+ transport systems, NAD-binding component; Psort location: Cytoplasmic, score: 8.87.
 
    
0.816
EDS74424.1
KEGG: shn:Shewana3_0031 7.8e-05 potassium uptake protein, TrkH family K00961; COG: COG0168 Trk-type K+ transport systems, membrane components; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
 0.781
EDS75879.1
E1-E2 ATPase; KEGG: smu:SMU.1563 3.5e-113 pacL; putative cation-transporting P-type ATPase PacL K01529; COG: COG0474 Cation transport ATPase; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.776
EDS75880.1
Haloacid dehalogenase-like hydrolase; KEGG: smu:SMU.1563 5.0e-169 pacL; putative cation-transporting P-type ATPase PacL K01529; COG: COG0474 Cation transport ATPase; Psort location: CytoplasmicMembrane, score: 9.99.
  
  
 0.776
nifJ
KEGG: fnu:FN1170 0. pyruvate-flavodoxin oxidoreductase K03737; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.570
EDS75883.1
Transposase, IS4 family; COG: COG3666 Transposase and inactivated derivatives.
       0.528
sun
Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
   0.521
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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