STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS75938.1Putative phage DNA packaging protein; COG: COG1376 Uncharacterized protein conserved in bacteria. (482 aa)    
Predicted Functional Partners:
EDS75937.1
Aminotransferase, class I/II; KEGG: mmp:MMP0096 9.6e-79 aminotransferase (subgroup I); COG: COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; Psort location: Cytoplasmic, score: 9.98.
       0.553
EDS73963.1
Hypothetical protein; KEGG: oih:OB1717 0.0094 biotin synthase K01012; COG: COG4720 Predicted membrane protein; Psort location: CytoplasmicMembrane, score: 9.26.
 
     0.479
EDS75939.1
Hypothetical protein; KEGG: chu:CHU_1525 0.0064 CHU large protein; possible rhs family-related protein and SAP-related protein K01238; COG: COG1664 Integral membrane protein CcmA involved in cell shape determination.
       0.438
EDS75037.1
Hypothetical protein; COG: NOG10993 non supervised orthologous group.
 
     0.427
EDS75936.1
Hypothetical protein; KEGG: tte:TTE1261 0.0040 aroE; shikimate 5-dehydrogenase K00014; Psort location: Cytoplasmic, score: 8.87.
       0.405
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.