STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS75943.1Transcriptional regulator, MerR family; KEGG: eci:UTI89_C3737 1.0e-07 yhdM; Zn(II)-responsive regulator of ZntA; COG: COG0789 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87. (262 aa)    
Predicted Functional Partners:
EDS75941.1
ABC-2 type transporter; COG: COG1228 Imidazolonepropionase and related amidohydrolases; Psort location: CytoplasmicMembrane, score: 9.99.
 
    0.953
EDS75942.1
KEGG: fnu:FN0376 8.7e-30 sfuC; iron(III)-transport ATP-binding protein sfuC K02010; COG: COG1131 ABC-type multidrug transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
    0.946
EDS74665.1
Glutamine synthetase, beta-grasp domain protein; KEGG: mma:MM0964 3.0e-91 glutamine synthetase K01915; COG: COG0174 Glutamine synthetase; Psort location: Cytoplasmic, score: 9.98.
  
 
 0.541
EDS75944.1
MutS domain V protein; KEGG: bcz:BCZK3528 1.4e-12 mutS; DNA mismatch repair protein, MutS family K03555; COG: COG0249 Mismatch repair ATPase (MutS family); Psort location: CytoplasmicMembrane, score: 9.99.
       0.530
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
 
 0.515
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.504
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
   0.488
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.483
EDS74181.1
Hypothetical protein; KEGG: mma:MM3140 2.6e-06 flavodoxin K00230; Psort location: Cytoplasmic, score: 8.87.
  
     0.450
EDS75398.1
Hypothetical protein; COG: NOG28550 non supervised orthologous group.
  
     0.444
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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