STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS75534.1Hypothetical protein; KEGG: cno:NT01CX_1516 1.3e-10 ribonuclease BN, putative; COG: COG1295 Predicted membrane protein; Psort location: CytoplasmicMembrane, score: 9.99. (246 aa)    
Predicted Functional Partners:
EDS75535.1
RNA methyltransferase, RsmE family; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
       0.553
EDS75536.1
Hypothetical protein.
       0.551
yqeV
tRNA methylthiotransferase YqeV; KEGG: bce:BC4308 7.7e-125 Fe-S oxidoreductase; COG: COG0621 2-methylthioadenine synthetase; Psort location: Cytoplasmic, score: 8.87.
       0.547
murE
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan.
       0.547
EDS74395.1
F5/8 type C domain protein; KEGG: cpe:CPE1364 1.2e-207 beta-N-acetylhexosaminidase K01207; COG: COG3525 N-acetyl-beta-hexosaminidase; Psort location: Extracellular, score: 9.73.
  
     0.539
EDS75553.1
Aminotransferase, class I/II; KEGG: ypn:YPN_0485 1.3e-106 aminotransferase K00812; COG: COG0436 Aspartate/tyrosine/aromatic aminotransferase; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.512
EDS75728.1
KEGG: cje:Cj1258 1.0e-26 possible phosphotyrosine protein phosphatase K01104; COG: COG0394 Protein-tyrosine-phosphatase; Psort location: Cytoplasmic, score: 8.87; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
 
  
 0.492
clpB
Putative ATP-dependent chaperone protein ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.
       0.464
EDS74264.1
Hypothetical protein; KEGG: pac:PPA2137 2.3e-09 anaerobic ribonucleoside triphosphate reductase K00527; COG: COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase; Psort location: Cytoplasmic, score: 8.87.
  
     0.425
EDS73714.1
COG: COG0523 Putative GTPases (G3E family); Psort location: Cytoplasmic, score: 8.87.
 
     0.413
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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