STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS75630.1Hypothetical protein; KEGG: pfa:PF10_0224 0.00032 dynein heavy chain, putative; COG: KOG1075 FOG: Reverse transcriptase. (410 aa)    
Predicted Functional Partners:
EDS73674.1
DNA-binding helix-turn-helix protein; KEGG: mmo:MMOB3450 0.00011 dam; adenine-specific DNA methyltransferase K06223; COG: COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases); Psort location: Cytoplasmic, score: 8.87.
   
 
 0.866
EDS73673.1
DNA-binding helix-turn-helix protein; COG: COG2946 Putative phage replication protein RstA; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.840
EDS75097.1
Hypothetical protein; COG: COG1476 Predicted transcriptional regulators.
   
 
 0.829
EDS74374.1
Hypothetical protein; COG: NOG08812 non supervised orthologous group.
  
     0.677
EDS74372.1
Hypothetical protein; KEGG: wbr:WGLp591 0.0030 thrA; aspartate kinase / homoserine dehydrogenase K00003:K00928; COG: NOG08812 non supervised orthologous group.
  
     0.649
EDS74206.1
DNA-binding helix-turn-helix protein; KEGG: eba:ebA2762 0.00060 boxR; putative regulator of aerobic benzoate metabolic operon containing shikimate kinase-like domain K00891; COG: NOG36343 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.648
EDS75619.1
DNA-binding helix-turn-helix protein; COG: COG1396 Predicted transcriptional regulators; Psort location: CytoplasmicMembrane, score: 9.26.
 
 
 0.601
EDS74163.1
DNA-binding helix-turn-helix protein; KEGG: par:Psyc_0717 0.00067 putative aminotransferase K00812; COG: COG1396 Predicted transcriptional regulators; Psort location: CytoplasmicMembrane, score: 9.99.
 
 
 0.594
EDS74332.1
Hypothetical protein; COG: NOG08812 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.551
EDS75700.1
DNA-binding helix-turn-helix protein; KEGG: sco:SCO5998 0.00038 murA2, SCBAC1C11.01c, StBAC16H6.33c; putative UDP-N-acetylglucosamine transferase K00790; COG: COG1396 Predicted transcriptional regulators.
  
 
 0.535
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.