STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS75630.1Hypothetical protein; KEGG: pfa:PF10_0224 0.00032 dynein heavy chain, putative; COG: KOG1075 FOG: Reverse transcriptase. (410 aa)    
Predicted Functional Partners:
EDS73674.1
DNA-binding helix-turn-helix protein; KEGG: mmo:MMOB3450 0.00011 dam; adenine-specific DNA methyltransferase K06223; COG: COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases); Psort location: Cytoplasmic, score: 8.87.
   
 
 0.809
EDS73673.1
DNA-binding helix-turn-helix protein; COG: COG2946 Putative phage replication protein RstA; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.743
EDS75097.1
Hypothetical protein; COG: COG1476 Predicted transcriptional regulators.
   
 
 0.726
EDS74374.1
Hypothetical protein; COG: NOG08812 non supervised orthologous group.
  
     0.677
EDS74372.1
Hypothetical protein; KEGG: wbr:WGLp591 0.0030 thrA; aspartate kinase / homoserine dehydrogenase K00003:K00928; COG: NOG08812 non supervised orthologous group.
  
     0.649
EDS74332.1
Hypothetical protein; COG: NOG08812 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.551
EDS75444.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
    0.484
EDS74725.1
Hypothetical protein; COG: NOG10981 non supervised orthologous group.
  
     0.437
EDS74190.1
Site-specific recombinase, phage integrase family; COG: COG0582 Integrase; Psort location: Cytoplasmic, score: 8.87.
  
     0.435
EDS75445.1
Hypothetical protein; COG: NOG11569 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.420
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.