STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS75299.1COG: COG3764 Sortase (surface protein transpeptidase). (283 aa)    
Predicted Functional Partners:
EDS75300.1
COG: COG4932 Predicted outer membrane protein; Psort location: Cellwall, score: 9.98.
 
  
 0.929
EDS75298.1
COG: COG3764 Sortase (surface protein transpeptidase); Psort location: CytoplasmicMembrane, score: 9.98.
 
    
0.836
EDS75301.1
COG: COG4932 Predicted outer membrane protein; Psort location: Cellwall, score: 9.94.
 
  
 0.823
EDS74230.1
COG: COG3764 Sortase (surface protein transpeptidase).
  
     0.701
EDS75297.1
Transposase, IS4 family; COG: COG3666 Transposase and inactivated derivatives.
       0.543
EDS75824.1
LPXTG-motif cell wall anchor domain protein; KEGG: smu:SMU.78 7.2e-234 fruA; fructan hydrolase; exo-beta-D-fructosidase; fructanase, FruA K03332; COG: COG1621 Beta-fructosidases (levanase/invertase); Psort location: Cellwall, score: 9.93.
 
   
 0.415
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.