Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS75300.1COG: COG4932 Predicted outer membrane protein; Psort location: Cellwall, score: 9.98. (586 aa)    
Predicted Functional Partners:
EDS75299.1
COG: COG3764 Sortase (surface protein transpeptidase).
 
   
 0.916
EDS75298.1
COG: COG3764 Sortase (surface protein transpeptidase); Psort location: CytoplasmicMembrane, score: 9.98.
 
   
 0.915
EDS75301.1
COG: COG4932 Predicted outer membrane protein; Psort location: Cellwall, score: 9.94.
 
     0.865
EDS74230.1
COG: COG3764 Sortase (surface protein transpeptidase).
 
   
 0.625
EDS75297.1
Transposase, IS4 family; COG: COG3666 Transposase and inactivated derivatives.
       0.447
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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