STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS75303.1KEGG: ecj:JW3597 4.4e-06 rfaL; O-antigen ligase K02847; COG: NOG36406 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99. (440 aa)    
Predicted Functional Partners:
EDS73944.1
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: eca:ECA1420 1.9e-50 rfbP, asmG; undecaprenyl-phosphate galactosephosphotransferase K00996; COG: COG2148 Sugar transferases involved in lipopolysaccharide synthesis; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.785
EDS75302.1
LytTr DNA-binding domain protein; COG: COG3279 Response regulator of the LytR/AlgR family; Psort location: Cytoplasmic, score: 8.87.
       0.773
EDS73933.1
Glycosyltransferase, group 2 family protein; KEGG: gbe:GbCGDNIH1_2152 3.5e-106 glycosyltransferase K00754; COG: COG0463 Glycosyltransferases involved in cell wall biogenesis; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.588
EDS75082.1
COG: COG5401 Spore germination protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.558
EDS74318.1
Hypothetical protein; COG: NOG23360 non supervised orthologous group.
 
   
 0.543
EDS73848.1
3D domain protein; COG: COG3584 Uncharacterized protein conserved in bacteria.
 
     0.521
EDS76100.1
dUTP diphosphatase; COG: COG4508 Uncharacterized protein conserved in bacteria.
  
     0.508
EDS73937.1
Glycosyltransferase, group 1 family protein; KEGG: pub:SAR11_0559 7.0e-15 rfaK; 1,2-N-acetylglucosaminetransferase; COG: COG0438 Glycosyltransferase; Psort location: CytoplasmicMembrane, score: 9.75.
  
 
 0.504
EDS75272.1
Polysaccharide biosynthesis protein; COG: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; Psort location: CytoplasmicMembrane, score: 9.99.
 
  
 0.490
EDS75967.1
AIG2-like family protein; COG: COG2105 Uncharacterized conserved protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.478
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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