STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS75358.1KEGG: reh:H16_A1397 1.5e-64 ABC-type transporter, ATPase component; COG: COG1101 ABC-type uncharacterized transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49. (266 aa)    
Predicted Functional Partners:
EDS75357.1
Branched-chain amino acid ABC transporter, permease protein; KEGG: msm:MSMEG_3090 8.6e-11 ribose transport system permease protein RbsC; COG: COG4120 ABC-type uncharacterized transport system, permease component; Psort location: CytoplasmicMembrane, score: 10.00.
     0.967
EDS75356.1
ABC transporter substrate binding protein; COG: COG2984 ABC-type uncharacterized transport system, periplasmic component.
 
     0.947
EDS75867.1
Branched-chain amino acid ABC transporter, permease protein; KEGG: eco:b4460 7.6e-10 araH; fused L-arabinose transporter subunits of ABC superfamily: membrane components K02057; COG: COG4120 ABC-type uncharacterized transport system, permease component; Psort location: CytoplasmicMembrane, score: 10.00.
     0.870
EDS75825.1
Sugar-binding domain protein; KEGG: msm:MSMEG_3095 4.0e-25 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component; Psort location: Cytoplasmic, score: 8.87.
  
 0.860
EDS75466.1
Hypothetical protein; COG: COG1879 ABC-type sugar transport system, periplasmic component.
  
 0.860
EDS75866.1
ABC transporter substrate binding protein; COG: COG2984 ABC-type uncharacterized transport system, periplasmic component.
 
     0.785
EDS75141.1
KEGG: efa:EF1922 0.00014 transcriptional regulator, LacI family/carbohydrate kinase, PfkB family protein K00852; COG: COG1609 Transcriptional regulators; Psort location: Cytoplasmic, score: 9.98.
  
 
 0.686
EDS74110.1
KEGG: reh:H16_A3653 3.3e-28 ABC-type transporter, ATPase and permease components; COG: COG4177 ABC-type branched-chain amino acid transport system, permease component; Psort location: CytoplasmicMembrane, score: 10.00.
   
 0.648
EDS74107.1
Receptor family ligand-binding protein; COG: COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.
    
 0.633
EDS74109.1
KEGG: fal:FRAAL2623 3.7e-29 hypothetical protein; putative membrane protein involved in branched-chain amino acid transport, ATP-binding; COG: COG0559 Branched-chain amino acid ABC-type transport system, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
   
 0.631
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.