STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS75358.1KEGG: reh:H16_A1397 1.5e-64 ABC-type transporter, ATPase component; COG: COG1101 ABC-type uncharacterized transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49. (266 aa)    
Predicted Functional Partners:
EDS75357.1
Branched-chain amino acid ABC transporter, permease protein; KEGG: msm:MSMEG_3090 8.6e-11 ribose transport system permease protein RbsC; COG: COG4120 ABC-type uncharacterized transport system, permease component; Psort location: CytoplasmicMembrane, score: 10.00.
     0.965
EDS75356.1
ABC transporter substrate binding protein; COG: COG2984 ABC-type uncharacterized transport system, periplasmic component.
 
     0.944
EDS75867.1
Branched-chain amino acid ABC transporter, permease protein; KEGG: eco:b4460 7.6e-10 araH; fused L-arabinose transporter subunits of ABC superfamily: membrane components K02057; COG: COG4120 ABC-type uncharacterized transport system, permease component; Psort location: CytoplasmicMembrane, score: 10.00.
     0.870
EDS75825.1
Sugar-binding domain protein; KEGG: msm:MSMEG_3095 4.0e-25 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.842
EDS75466.1
Hypothetical protein; COG: COG1879 ABC-type sugar transport system, periplasmic component.
  
 
 0.842
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
   
   0.828
EDS75866.1
ABC transporter substrate binding protein; COG: COG2984 ABC-type uncharacterized transport system, periplasmic component.
 
     0.786
pheS
KEGG: bld:BLi03016 1.4e-123 pheS; phenylalanyl-tRNA synthetase (alpha subunit); RBL00343 K01889; COG: COG0016 Phenylalanyl-tRNA synthetase alpha subunit; Psort location: Cytoplasmic, score: 10.00.
   
   0.497
EDS75491.1
Hypothetical protein; KEGG: sha:SH0521 2.0e-10 ptsG; phosphotransferase system enzyme II K02777:K02778:K02779; COG: COG2190 Phosphotransferase system IIA components.
   
  
 0.494
EDS73779.1
KEGG: sar:SAR0235 1.9e-137 putative PTS transport system, IIBC component K02790:K02791; COG: COG1264 Phosphotransferase system IIB components; Psort location: CytoplasmicMembrane, score: 10.00.
   
  
 0.494
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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