STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS75400.1KEGG: tcx:Tcr_1209 8.0e-07 exodeoxyribonuclease VII, large subunit K03601; COG: NOG21997 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87. (226 aa)    
Predicted Functional Partners:
EDS76081.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
    
 
 0.568
EDS74739.1
TIGR02677 family protein; KEGG: fnu:FN0522 0.0032 exonuclease SBCC K03546; COG: NOG04769 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
    
 
 0.568
EDS74317.1
Hypothetical protein; COG: NOG23360 non supervised orthologous group.
    
 
 0.568
EDS74318.1
Hypothetical protein; COG: NOG23360 non supervised orthologous group.
    
 
 0.568
satD
SatD protein; COG: NOG17180 non supervised orthologous group.
   
   0.530
EDS75858.1
Sigma-70, region 4; COG: NOG16920 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
   
   0.530
EDS75109.1
COG: COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Psort location: Cytoplasmic, score: 8.87; Belongs to the sigma-70 factor family. ECF subfamily.
   
   0.530
EDS74617.1
COG: COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Psort location: Cytoplasmic, score: 8.87; Belongs to the sigma-70 factor family.
   
   0.530
EDS74495.1
Sigma-70 region 2; KEGG: bcz:BCZK3297 5.0e-11 RNA polymerase ECF-type sigma factor K03088; COG: COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
   
   0.530
EDS73680.1
Sigma-70, region 4; COG: NOG16920 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
   
   0.530
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.