STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS75405.1Hypothetical protein; KEGG: hso:HS_1631 5.9e-08 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) K03775; COG: COG3906 Uncharacterized protein conserved in bacteria; Belongs to the UPF0473 family. (129 aa)    
Predicted Functional Partners:
EDS75406.1
RNAse H domain protein, YqgF family; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
  
    0.923
EDS75407.1
COG: COG4472 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.916
alaS
alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
       0.652
EDS75270.1
Sporulation protein YunB (Spo_YunB); COG: NOG11559 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.610
EDS74799.1
DnaD domain protein; KEGG: sha:SH1234 0.0065 polA; DNA polymerase I K02335; COG: COG3935 Putative primosome component and related proteins; Psort location: Cytoplasmic, score: 8.87.
  
     0.486
EDS76029.1
KEGG: sph:MGAS10270_Spy0282 3.5e-05 dnaB; replicative DNA helicase K01529; COG: COG3611 Replication initiation/membrane attachment protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.449
comFA
ComF operon protein 1; KEGG: erw:ERWE_CDS_00310 4.1e-09 recG; ATP-dependent DNA helicase RecG K03655; COG: COG4098 Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein).
  
     0.421
yqeH
Ribosome biogenesis GTPase YqeH; KEGG: lil:LA0134 0.00025 hypothetical protein K06949; COG: COG1161 Predicted GTPases; Psort location: Cytoplasmic, score: 8.87.
 
     0.421
EDS75404.1
KEGG: ssp:SSP0322 1.7e-40 putative 6-O-methylguanine DNA methyltransferase K00567; COG: COG0350 Methylated DNA-protein cysteine methyltransferase; Psort location: Cytoplasmic, score: 8.87.
       0.413
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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