STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS75082.1COG: COG5401 Spore germination protein; Psort location: Cytoplasmic, score: 8.87. (302 aa)    
Predicted Functional Partners:
EDS75779.1
COG: COG2834 Outer membrane lipoprotein-sorting protein.
  
    0.758
EDS73848.1
3D domain protein; COG: COG3584 Uncharacterized protein conserved in bacteria.
  
     0.743
EDS75841.1
Putative sporulation protein YunB; COG: NOG11559 non supervised orthologous group.
  
     0.731
EDS75152.1
Polysaccharide biosynthesis protein; KEGG: cac:CAC3205 0.0061 spoIIE; stage II sporulation protein E, serine phosphatase family K06382; COG: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; Psort location: CytoplasmicMembrane, score: 9.99.
  
    0.731
EDS75999.1
Putative sporulation protein YqfD; COG: NOG07866 non supervised orthologous group.
  
    0.711
EDS73819.1
KEGG: oih:OB0074 1.3e-40 stage II sporulation protein E K06382; COG: COG2208 Serine phosphatase RsbU, regulator of sigma subunit; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.708
EDS75081.1
KEGG: spd:SPD_1659 1.3e-12 phosphodiesterase, MJ0936 family protein; COG: COG0622 Predicted phosphoesterase; Psort location: Cytoplasmic, score: 8.87.
       0.649
EDS74428.1
Hypothetical protein; KEGG: rfe:RF_0460 0.0018 nuoN2; NADH dehydrogenase subunit N K00329; COG: NOG18662 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.646
EDS75059.1
Peptidase, M50 family; KEGG: bca:BCE_4538 3.3e-21 spoIVFB; stage IV sporulation protein FB K06402; COG: COG1994 Zn-dependent proteases.
  
    0.626
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
       0.604
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.