STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS75132.1Putative membrane protein; KEGG: pto:PTO1028 0.0091 NADH-quinone oxidoreductase chain M K00342; COG: COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; Psort location: CytoplasmicMembrane, score: 9.99. (283 aa)    
Predicted Functional Partners:
ribF
KEGG: bar:GBAA3946 2.6e-60 ribC; riboflavin biosynthesis protein RibC K00861:K00953; COG: COG0196 FAD synthase; Psort location: Cytoplasmic, score: 8.87; Belongs to the ribF family.
       0.693
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
  
    0.687
EDS75792.1
Acetyltransferase, GNAT family; KEGG: bsu:BG10906 5.9e-08 bltD, bmr2D, bmtD; spermine/spermidine acetyltransferase K00657; COG: COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.650
EDS73819.1
KEGG: oih:OB0074 1.3e-40 stage II sporulation protein E K06382; COG: COG2208 Serine phosphatase RsbU, regulator of sigma subunit; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.557
EDS75082.1
COG: COG5401 Spore germination protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.547
EDS75135.1
PP-loop family protein; KEGG: reh:H16_A0260 5.2e-32 predicted ATPase of the PP-loop superfamily implicated in cell cycle control K01529; COG: COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control; Psort location: Cytoplasmic, score: 8.87; Belongs to the TtcA family.
  
    0.513
EDS75841.1
Putative sporulation protein YunB; COG: NOG11559 non supervised orthologous group.
  
     0.480
EDS75977.1
GDSL-like protein; KEGG: rno:64189 3.4e-08 Pafah1b2; platelet-activating factor acetylhydrolase, isoform 1b, alpha2 subunit K01062; COG: COG2755 Lysophospholipase L1 and related esterases; Psort location: Cytoplasmic, score: 8.87.
 
     0.455
EDS73848.1
3D domain protein; COG: COG3584 Uncharacterized protein conserved in bacteria.
  
     0.435
pheT
KEGG: gka:GK2706 2.5e-151 phenylalanyl-tRNA synthetase beta subunit K01890; COG: COG0073 EMAP domain; Psort location: Cytoplasmic, score: 9.98.
  
   0.420
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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