Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EDS75137.1 | EDS75138.1 | CLOSPI_00965 | CLOSPI_00966 | Acetyltransferase, GNAT family; KEGG: dar:Daro_0099 1.3e-11 GCN5-related N-acetyltransferase:carbonic anhydrase, prokaryotic and plant K01673; COG: KOG3139 N-acetyltransferase. | Putative transposase, IS4 family; KEGG: fnu:FN0522 0.00026 exonuclease SBCC K03546; COG: COG5421 Transposase; Psort location: Cytoplasmic, score: 8.87. | 0.524 |
EDS75137.1 | ilvA | CLOSPI_00965 | CLOSPI_00160 | Acetyltransferase, GNAT family; KEGG: dar:Daro_0099 1.3e-11 GCN5-related N-acetyltransferase:carbonic anhydrase, prokaryotic and plant K01673; COG: KOG3139 N-acetyltransferase. | Threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.704 |
EDS75137.1 | tyrS | CLOSPI_00965 | CLOSPI_00964 | Acetyltransferase, GNAT family; KEGG: dar:Daro_0099 1.3e-11 GCN5-related N-acetyltransferase:carbonic anhydrase, prokaryotic and plant K01673; COG: KOG3139 N-acetyltransferase. | tyrosine--tRNA ligase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily. | 0.420 |
EDS75138.1 | EDS75137.1 | CLOSPI_00966 | CLOSPI_00965 | Putative transposase, IS4 family; KEGG: fnu:FN0522 0.00026 exonuclease SBCC K03546; COG: COG5421 Transposase; Psort location: Cytoplasmic, score: 8.87. | Acetyltransferase, GNAT family; KEGG: dar:Daro_0099 1.3e-11 GCN5-related N-acetyltransferase:carbonic anhydrase, prokaryotic and plant K01673; COG: KOG3139 N-acetyltransferase. | 0.524 |
ilvA | EDS75137.1 | CLOSPI_00160 | CLOSPI_00965 | Threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | Acetyltransferase, GNAT family; KEGG: dar:Daro_0099 1.3e-11 GCN5-related N-acetyltransferase:carbonic anhydrase, prokaryotic and plant K01673; COG: KOG3139 N-acetyltransferase. | 0.704 |
tyrS | EDS75137.1 | CLOSPI_00964 | CLOSPI_00965 | tyrosine--tRNA ligase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily. | Acetyltransferase, GNAT family; KEGG: dar:Daro_0099 1.3e-11 GCN5-related N-acetyltransferase:carbonic anhydrase, prokaryotic and plant K01673; COG: KOG3139 N-acetyltransferase. | 0.420 |