STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS75139.1Acetyltransferase, GNAT family; KEGG: dar:Daro_0099 2.5e-20 GCN5-related N-acetyltransferase:carbonic anhydrase, prokaryotic and plant K01673; COG: KOG3139 N-acetyltransferase; Psort location: Cytoplasmic, score: 8.87. (151 aa)    
Predicted Functional Partners:
EDS75898.1
Acetyltransferase, GNAT family; KEGG: mba:Mbar_A3398 1.6e-28 ribosomal-protein-alanine acetyltransferase K00676; COG: COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.714
ilvA
Threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.
    
  0.704
EDS75904.1
Hydrolase, NUDIX family; KEGG: bcl:ABC0282 7.7e-38 ADP-ribose pyrophosphatase K01515; COG: COG1051 ADP-ribose pyrophosphatase.
 
    0.658
EDS75140.1
Bacterial transferase hexapeptide repeat protein; KEGG: syf:Synpcc7942_0704 3.6e-56 chloramphenicol O-acetyltransferase K00638; COG: COG0110 Acetyltransferase (isoleucine patch superfamily); Psort location: Cytoplasmic, score: 9.98.
     
 0.540
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.