STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS75209.1Cupin domain protein; COG: COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain. (129 aa)    
Predicted Functional Partners:
EDS74238.1
KEGG: hhe:HH1468 5.2e-16 4-carboxymuconolactone decarboxylase K01607; COG: COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit; Psort location: Cytoplasmic, score: 8.87.
  
 0.944
EDS75207.1
Flavodoxin; COG: COG0716 Flavodoxins.
 
     0.816
EDS75208.1
Riboflavin biosynthesis protein RibD C-terminal domain protein; KEGG: mja:MJ0671 1.4e-15 5-amino-6-(5-phosphoribosylamino)uracil reductase K00082; COG: COG1985 Pyrimidine reductase, riboflavin biosynthesis.
 
     0.811
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
    
  0.632
EDS75210.1
Hypothetical protein; KEGG: bcc:BCc_198 0.0039 pykA; PykA K00873; Psort location: Cytoplasmic, score: 8.87.
       0.516
EDS75206.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.477
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.442
EDS74218.1
Chorismate mutase; KEGG: aae:aq_951 3.3e-53 pheA; chorismate mutase/prephenate dehydratase K04093:K04518; COG: COG0077 Prephenate dehydratase; Psort location: Cytoplasmic, score: 9.98.
  
 
 0.432
purB
KEGG: vfi:VF1786 1.4e-109 adenylosuccinate lyase K01756; COG: COG0015 Adenylosuccinate lyase; Psort location: Cytoplasmic, score: 8.87.
   
 0.408
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.