STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS74997.1ABC transporter, ATP-binding protein; KEGG: rru:Rru_A0126 1.6e-37 ABC transporter component K06020; COG: COG4555 ABC-type Na+ transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49. (243 aa)    
Predicted Functional Partners:
EDS74998.1
ABC-2 type transporter; COG: COG1668 ABC-type Na+ efflux pump, permease component; Psort location: CytoplasmicMembrane, score: 9.99.
 
 
 0.991
EDS73755.1
KEGG: cch:Cag_1883 2.4e-91 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like K02031; COG: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
    
0.900
EDS74258.1
Putative bacteriocin export ABC transporter, lactococcin 972 group; KEGG: ljo:LJ0787 2.5e-32 ABC transporter ATPase component K02028; COG: COG1136 ABC-type antimicrobial peptide transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
    
0.677
EDS74862.1
ABC transporter, ATP-binding protein; KEGG: ssp:SSP0244 8.2e-14 ABC-type polar amino acid transport system ATPase component K02028; COG: COG1136 ABC-type antimicrobial peptide transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.618
EDS74110.1
KEGG: reh:H16_A3653 3.3e-28 ABC-type transporter, ATPase and permease components; COG: COG4177 ABC-type branched-chain amino acid transport system, permease component; Psort location: CytoplasmicMembrane, score: 10.00.
 
      0.524
EDS75358.1
KEGG: reh:H16_A1397 1.5e-64 ABC-type transporter, ATPase component; COG: COG1101 ABC-type uncharacterized transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
     
0.428
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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