STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS74743.1six-Cys-in-45 modification radical SAM protein; KEGG: syg:sync_2368 3.1e-05 arylsulfatase regulator; COG: COG0641 Arylsulfatase regulator (Fe-S oxidoreductase); Psort location: Cytoplasmic, score: 8.87. (461 aa)    
Predicted Functional Partners:
EDS74744.1
Orn/Lys/Arg decarboxylase, major domain protein; KEGG: tte:TTE0093 1.3e-42 ldcC; Arginine/lysine/ornithine decarboxylases K01582; COG: COG1982 Arginine/lysine/ornithine decarboxylases; Psort location: Cytoplasmic, score: 8.87.
 
     0.924
EDS74742.1
Hypothetical protein.
       0.773
EDS75323.1
LPXTG-motif cell wall anchor domain protein; KEGG: cpf:CPF_0184 6.6e-07 nagH; hyaluronidase K01197; COG: NOG38526 non supervised orthologous group; Psort location: Extracellular, score: 9.55.
  
 
 0.746
EDS74741.1
Aluminum resistance protein; KEGG: ava:Ava_4213 7.4e-88 Cys/Met metabolism pyridoxal-phosphate-dependent enzyme K01758; COG: COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance.
 
     0.634
EDS74281.1
Hypothetical protein; COG: COG2384 Predicted SAM-dependent methyltransferase.
  
     0.599
EDS75407.1
COG: COG4472 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score: 8.87.
  
     0.534
EDS75612.1
Hypothetical protein; KEGG: pfa:PF10_0224 1.1e-09 dynein heavy chain, putative; COG: COG3857 ATP-dependent nuclease, subunit B; Psort location: Cytoplasmic, score: 8.87.
  
     0.421
nrdG-2
Anaerobic ribonucleoside-triphosphate reductase activating protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.
  
  
 0.421
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.