EDS74758.1 protein (Clostridium spiroforme) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EDS74758.1

Hypothetical protein; COG: COG0419 ATPase involved in DNA repair. (343 aa)

Predicted Functional Partners:

rpoA

0.524

rpoD

0.524

rpoB

0.524

rpoC

0.524

EDS74759.1

0.521

EDS74760.1

0.449

Your Current Organism:

Clostridium spiroforme

NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EDS74758.1	EDS74759.1	CLOSPI_01535	CLOSPI_01536	Hypothetical protein; COG: COG0419 ATPase involved in DNA repair.	Hypothetical protein; Psort location: Extracellular, score: 8.82.	0.521
EDS74758.1	EDS74760.1	CLOSPI_01535	CLOSPI_01537	Hypothetical protein; COG: COG0419 ATPase involved in DNA repair.	Hypothetical protein; Psort location: Extracellular, score: 8.82.	0.449
EDS74758.1	rpoA	CLOSPI_01535	CLOSPI_01595	Hypothetical protein; COG: COG0419 ATPase involved in DNA repair.	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.524
EDS74758.1	rpoB	CLOSPI_01535	CLOSPI_02525	Hypothetical protein; COG: COG0419 ATPase involved in DNA repair.	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.524
EDS74758.1	rpoC	CLOSPI_01535	CLOSPI_02526	Hypothetical protein; COG: COG0419 ATPase involved in DNA repair.	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.524
EDS74758.1	rpoD	CLOSPI_01535	CLOSPI_01864	Hypothetical protein; COG: COG0419 ATPase involved in DNA repair.	RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.524
EDS74759.1	EDS74758.1	CLOSPI_01536	CLOSPI_01535	Hypothetical protein; Psort location: Extracellular, score: 8.82.	Hypothetical protein; COG: COG0419 ATPase involved in DNA repair.	0.521
EDS74759.1	EDS74760.1	CLOSPI_01536	CLOSPI_01537	Hypothetical protein; Psort location: Extracellular, score: 8.82.	Hypothetical protein; Psort location: Extracellular, score: 8.82.	0.655
EDS74760.1	EDS74758.1	CLOSPI_01537	CLOSPI_01535	Hypothetical protein; Psort location: Extracellular, score: 8.82.	Hypothetical protein; COG: COG0419 ATPase involved in DNA repair.	0.449
EDS74760.1	EDS74759.1	CLOSPI_01537	CLOSPI_01536	Hypothetical protein; Psort location: Extracellular, score: 8.82.	Hypothetical protein; Psort location: Extracellular, score: 8.82.	0.655
rpoA	EDS74758.1	CLOSPI_01595	CLOSPI_01535	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Hypothetical protein; COG: COG0419 ATPase involved in DNA repair.	0.524
rpoA	rpoB	CLOSPI_01595	CLOSPI_02525	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoA	rpoC	CLOSPI_01595	CLOSPI_02526	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoA	rpoD	CLOSPI_01595	CLOSPI_01864	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.963
rpoB	EDS74758.1	CLOSPI_02525	CLOSPI_01535	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Hypothetical protein; COG: COG0419 ATPase involved in DNA repair.	0.524
rpoB	rpoA	CLOSPI_02525	CLOSPI_01595	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoB	rpoC	CLOSPI_02525	CLOSPI_02526	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoB	rpoD	CLOSPI_02525	CLOSPI_01864	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.963
rpoC	EDS74758.1	CLOSPI_02526	CLOSPI_01535	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Hypothetical protein; COG: COG0419 ATPase involved in DNA repair.	0.524
rpoC	rpoA	CLOSPI_02526	CLOSPI_01595	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999