STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS74194.1Hypothetical protein. (97 aa)    
Predicted Functional Partners:
EDS74195.1
Hypothetical protein.
       0.773
EDS74196.1
Hypothetical protein; COG: COG0700 Uncharacterized membrane protein; Psort location: CytoplasmicMembrane, score: 9.99.
       0.543
EDS74197.1
Hypothetical protein; COG: COG2715 Uncharacterized membrane protein, required for spore maturation in B.subtilis; Psort location: CytoplasmicMembrane, score: 9.99.
       0.543
EDS74198.1
Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: bar:GBAA1490 1.1e-52 D-alanyl-D-alanine carboxypeptidase family protein K01286; COG: COG1686 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
       0.543
EDS74193.1
Transposase; COG: COG2963 Transposase and inactivated derivatives; Psort location: Cytoplasmic, score: 8.87.
       0.512
EDS74192.1
Hypothetical protein; KEGG: nwi:Nwi_0782 1.4e-05 integrase, catalytic region K00986; COG: COG2801 Transposase and inactivated derivatives; Psort location: Cytoplasmic, score: 8.87.
       0.488
EDS74199.1
COG: COG3809 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score: 8.87.
       0.422
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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