STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS74249.1Transcriptional regulator, PadR family; COG: COG1695 Predicted transcriptional regulators. (105 aa)    
Predicted Functional Partners:
EDS74250.1
COG: COG4709 Predicted membrane protein; Psort location: CytoplasmicMembrane, score: 9.99.
 
     0.944
EDS74252.1
PspC domain protein; COG: COG1983 Putative stress-responsive transcriptional regulator.
       0.794
EDS74251.1
Hypothetical protein; COG: COG3595 Uncharacterized conserved protein.
       0.781
EDS74248.1
Hypothetical protein.
       0.773
EDS75242.1
Transcriptional regulator, PadR family; COG: COG1695 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
  
     0.759
EDS74247.1
Transposase; COG: COG3547 Transposase and inactivated derivatives; Psort location: Cytoplasmic, score: 8.87.
       0.540
EDS74253.1
KEGG: pen:PSEEN3176 9.7e-134 ABC transporte, ATP binding protein; COG: COG0488 ATPase components of ABC transporters with duplicated ATPase domains; Psort location: CytoplasmicMembrane, score: 9.49.
       0.486
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.