STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS74250.1COG: COG4709 Predicted membrane protein; Psort location: CytoplasmicMembrane, score: 9.99. (232 aa)    
Predicted Functional Partners:
EDS74249.1
Transcriptional regulator, PadR family; COG: COG1695 Predicted transcriptional regulators.
 
     0.944
EDS74251.1
Hypothetical protein; COG: COG3595 Uncharacterized conserved protein.
  
 
  0.917
EDS74252.1
PspC domain protein; COG: COG1983 Putative stress-responsive transcriptional regulator.
       0.789
EDS74248.1
Hypothetical protein.
       0.773
EDS74247.1
Transposase; COG: COG3547 Transposase and inactivated derivatives; Psort location: Cytoplasmic, score: 8.87.
       0.540
EDS75824.1
LPXTG-motif cell wall anchor domain protein; KEGG: smu:SMU.78 7.2e-234 fruA; fructan hydrolase; exo-beta-D-fructosidase; fructanase, FruA K03332; COG: COG1621 Beta-fructosidases (levanase/invertase); Psort location: Cellwall, score: 9.93.
  
 
 0.537
EDS75858.1
Sigma-70, region 4; COG: NOG16920 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
 0.530
EDS73680.1
Sigma-70, region 4; COG: NOG16920 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
 0.524
EDS74253.1
KEGG: pen:PSEEN3176 9.7e-134 ABC transporte, ATP binding protein; COG: COG0488 ATPase components of ABC transporters with duplicated ATPase domains; Psort location: CytoplasmicMembrane, score: 9.49.
       0.486
EDS75109.1
COG: COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Psort location: Cytoplasmic, score: 8.87; Belongs to the sigma-70 factor family. ECF subfamily.
  
 0.441
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.