STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS74267.1Amidohydrolase; KEGG: fnu:FN0590 4.7e-70 N-acyl-L-amino acid amidohydrolase K01436; COG: COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; Psort location: Cytoplasmic, score: 8.87. (377 aa)    
Predicted Functional Partners:
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
    
 0.922
dapD
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase; Catalyzes the transfer of an acetyl group from acetyl-CoA to tetrahydrodipicolinate.
 
  
 0.914
EDS75817.1
Class II glutamine amidotransferase; KEGG: syn:sll1502 0. gltB; NADH-dependent glutamate synthase large subunit K00268; COG: COG0069 Glutamate synthase domain 2; Psort location: Cytoplasmic, score: 8.87.
    
  0.866
argD
Aminotransferase, acetylornithine/succinylornithine family; KEGG: mja:MJ0721 3.6e-95 argD; acetylornithine aminotransferase K00818; COG: COG4992 Ornithine/acetylornithine aminotransferase; Psort location: Cytoplasmic, score: 8.87.
       0.784
EDS75098.1
Cytidine and deoxycytidylate deaminase zinc-binding region; KEGG: fnu:FN1902 5.3e-55 deoxycytidylate deaminase K01493; COG: COG2131 Deoxycytidylate deaminase; Psort location: Cytoplasmic, score: 8.87.
 
      0.659
EDS74269.1
KEGG: shn:Shewana3_3300 1.4e-13 chromate transporter, chromate ion transporter (CHR) family K00229; COG: COG2059 Chromate transport protein ChrA; Psort location: CytoplasmicMembrane, score: 9.99.
       0.644
EDS74270.1
KEGG: shn:Shewana3_3300 2.0e-09 chromate transporter, chromate ion transporter (CHR) family K00229; COG: COG2059 Chromate transport protein ChrA; Psort location: CytoplasmicMembrane, score: 9.99.
       0.644
EDS74271.1
ABC transporter, ATP-binding protein; KEGG: spd:SPD_0049 5.3e-55 comA; competence factor transporting ATP-binding/permease protein ComA; COG: COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.619
cdd
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
       0.571
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
       0.571
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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