STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
recODNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (250 aa)    
Predicted Functional Partners:
recR
Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
 
 
 0.952
era
Ribosome biogenesis GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
  
  
 0.925
cdd
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
 
  
 0.864
ybeY
Translation metalloprotein YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
  
 0.859
EDS74271.1
ABC transporter, ATP-binding protein; KEGG: spd:SPD_0049 5.3e-55 comA; competence factor transporting ATP-binding/permease protein ComA; COG: COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain; Psort location: CytoplasmicMembrane, score: 10.00.
       0.773
EDS76000.1
PhoH family protein; KEGG: reh:H16_A0527 7.2e-74 phoH; phosphate starvation-inducible protein PhoH,predicted ATPase; COG: COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase; Psort location: Cytoplasmic, score: 9.98.
  
  
 0.746
EDS74276.1
Putative radical SAM protein YgiQ; KEGG: fnu:FN0734 8.1e-130 Fe-S oxidoreductase; COG: COG1032 Fe-S oxidoreductase; Psort location: Cytoplasmic, score: 8.87.
       0.713
EDS74277.1
Hypothetical protein; KEGG: ctc:CTC00812 5.1e-41 putative lysophospholipase L2 K01048; COG: COG2267 Lysophospholipase; Psort location: Cytoplasmic, score: 8.87.
       0.713
EDS74269.1
KEGG: shn:Shewana3_3300 1.4e-13 chromate transporter, chromate ion transporter (CHR) family K00229; COG: COG2059 Chromate transport protein ChrA; Psort location: CytoplasmicMembrane, score: 9.99.
       0.677
EDS74270.1
KEGG: shn:Shewana3_3300 2.0e-09 chromate transporter, chromate ion transporter (CHR) family K00229; COG: COG2059 Chromate transport protein ChrA; Psort location: CytoplasmicMembrane, score: 9.99.
       0.677
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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