Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
EDS74308.1Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: gka:GK2311 1.9e-82 D-alanyl-D-alanine carboxypeptidase (penicilin binding protein) K01286; COG: COG1686 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. (380 aa)    
Predicted Functional Partners:
EDS74198.1
Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: bar:GBAA1490 1.1e-52 D-alanyl-D-alanine carboxypeptidase family protein K01286; COG: COG1686 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
 
  
 
0.928
EDS74397.1
Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: oih:OB1842 4.5e-42 dacF; D-alanyl-D-alanine carboxypeptidase K07258; COG: COG1686 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
 
  
 
0.927
ponA
KEGG: gka:GK2168 7.4e-104 penicillin-binding protein 1A/1B (PBP1) (penicillin-insensitive transglycosylase (peptidoglycan TGase); penicillin-sensitive transpeptidase (DD-transpeptidase)) K05366; COG: COG0744 Membrane carboxypeptidase (penicillin-binding protein); Psort location: Extracellular, score: 9.73.
  
 
 0.914
EDS75740.1
Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: oih:OB0530 5.6e-39 carboxypeptidase K07260; COG: COG1876 D-alanyl-D-alanine carboxypeptidase; Psort location: Cytoplasmic, score: 9.36.
     
 0.903
EDS73709.1
Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: bli:BL01438 3.6e-33 yodJ; putative carboxypeptidase K07260; COG: COG1876 D-alanyl-D-alanine carboxypeptidase; Psort location: Cytoplasmic, score: 9.36.
     
 0.903
EDS73810.1
Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: sth:STH1075 4.2e-30 putative D-alanyl-D-alanine carboxypeptidase K07260; COG: COG1876 D-alanyl-D-alanine carboxypeptidase; Psort location: Cytoplasmic, score: 9.65.
     
 0.903
spoIIAB
Anti-sigma F factor; KEGG: cpr:CPR_2021 9.4e-33 spoIIAB; anti-sigma F factor K06379; COG: COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase); Psort location: Cytoplasmic, score: 8.87.
 
   
 0.764
sigF
KEGG: hpa:HPAG1_0089 4.4e-23 RNA polymerase sigma-80 factor K00960; COG: COG1191 DNA-directed RNA polymerase specialized sigma subunit; Psort location: Cytoplasmic, score: 9.98; Belongs to the sigma-70 factor family.
 
     0.734
EDS74309.1
STAS domain protein; KEGG: msu:MS1346 0.0064 hemH; protoheme ferro-lyase (ferrochelatase) K01772; COG: COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); Belongs to the anti-sigma-factor antagonist family.
 
   
 0.688
lepB-2
Signal peptidase I; KEGG: ctc:CTC01253 9.3e-26 putative signal peptidase I K03100; COG: COG0681 Signal peptidase I; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the peptidase S26 family.
 
  
 0.592
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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