STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS74342.1Polysaccharide biosynthesis protein; KEGG: lsl:LSL_0995 8.4e-167 UDP-N-acetylglucosamine 4,6-dehydratase / UDP-D-quinovosamine 4-dehydrogenase K00100:K01726; COG: COG1086 Predicted nucleoside-diphosphate sugar epimerases; Psort location: Cytoplasmic, score: 8.87. (581 aa)    
Predicted Functional Partners:
EDS74346.1
Glycosyltransferase, group 1 family protein; KEGG: cgb:cg0420 3.3e-30 glycosyl transferase K00754; COG: COG0438 Glycosyltransferase; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.907
EDS75394.1
DegT/DnrJ/EryC1/StrS aminotransferase family protein; KEGG: cno:NT01CX_1463 6.9e-101 spsC; spore coat polysaccharide biosynthesis protein SpsC K01726; COG: COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Psort location: Cytoplasmic, score: 8.87; Belongs to the DegT/DnrJ/EryC1 family.
 
 0.893
EDS74344.1
Bacterial sugar transferase; KEGG: cpe:CPE0614 9.9e-38 rfbP; probable undecaprenyl phosphate galactosephosphotransferase K00996; COG: COG2148 Sugar transferases involved in lipopolysaccharide synthesis; Psort location: CytoplasmicMembrane, score: 9.49.
 
 
 0.854
EDS74343.1
Sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; KEGG: cgb:cg0439 4.8e-13 putative acetyl transferase protein K00680; COG: COG0110 Acetyltransferase (isoleucine patch superfamily); Psort location: Cytoplasmic, score: 8.87.
 
  
 0.834
EDS74345.1
HpcH/HpaI aldolase/citrate lyase family protein; KEGG: sto:ST1786 0.0018 citrate lyase beta chain K01644; Psort location: Cytoplasmic, score: 8.87; Belongs to the HpcH/HpaI aldolase family.
 
     0.807
EDS74348.1
Hypothetical protein; COG: NOG21681 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.800
EDS74347.1
Glycosyltransferase, group 2 family protein; KEGG: fth:FTH_1387 1.4e-31 glycosyltransferase K00754; COG: COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
  
 0.796
cps4K
Capsular polysaccharide biosynthesis protein Cps4K; KEGG: vfi:VF0192 2.6e-60 UDP-2-acetamido-2,6-dideoxy-beta-L-talose 4-dehydrogenase K00100; COG: COG0451 Nucleoside-diphosphate-sugar epimerases; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.761
EDS75171.1
Hypothetical protein; KEGG: vfi:VF0192 0.00030 UDP-2-acetamido-2,6-dideoxy-beta-L-talose 4-dehydrogenase K00100; COG: COG0451 Nucleoside-diphosphate-sugar epimerases.
  
 
 0.761
EDS75176.1
NAD dependent epimerase/dehydratase family protein; KEGG: vfi:VF0192 4.6e-72 UDP-2-acetamido-2,6-dideoxy-beta-L-talose 4-dehydrogenase K00100; COG: COG0451 Nucleoside-diphosphate-sugar epimerases; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.761
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.