STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS74342.1Polysaccharide biosynthesis protein; KEGG: lsl:LSL_0995 8.4e-167 UDP-N-acetylglucosamine 4,6-dehydratase / UDP-D-quinovosamine 4-dehydrogenase K00100:K01726; COG: COG1086 Predicted nucleoside-diphosphate sugar epimerases; Psort location: Cytoplasmic, score: 8.87. (581 aa)    
Predicted Functional Partners:
EDS74346.1
Glycosyltransferase, group 1 family protein; KEGG: cgb:cg0420 3.3e-30 glycosyl transferase K00754; COG: COG0438 Glycosyltransferase; Psort location: Cytoplasmic, score: 8.87.
 
    0.898
EDS74344.1
Bacterial sugar transferase; KEGG: cpe:CPE0614 9.9e-38 rfbP; probable undecaprenyl phosphate galactosephosphotransferase K00996; COG: COG2148 Sugar transferases involved in lipopolysaccharide synthesis; Psort location: CytoplasmicMembrane, score: 9.49.
 
  
 0.860
EDS75394.1
DegT/DnrJ/EryC1/StrS aminotransferase family protein; KEGG: cno:NT01CX_1463 6.9e-101 spsC; spore coat polysaccharide biosynthesis protein SpsC K01726; COG: COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Psort location: Cytoplasmic, score: 8.87; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.850
EDS74343.1
Sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; KEGG: cgb:cg0439 4.8e-13 putative acetyl transferase protein K00680; COG: COG0110 Acetyltransferase (isoleucine patch superfamily); Psort location: Cytoplasmic, score: 8.87.
 
    0.827
EDS74345.1
HpcH/HpaI aldolase/citrate lyase family protein; KEGG: sto:ST1786 0.0018 citrate lyase beta chain K01644; Psort location: Cytoplasmic, score: 8.87; Belongs to the HpcH/HpaI aldolase family.
 
     0.802
EDS74347.1
Glycosyltransferase, group 2 family protein; KEGG: fth:FTH_1387 1.4e-31 glycosyltransferase K00754; COG: COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
  
 0.794
EDS74348.1
Hypothetical protein; COG: NOG21681 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
    0.790
EDS74974.1
Chain length determinant protein; KEGG: ava:Ava_1045 1.3e-29 lipopolysaccharide biosynthesis K00903; COG: COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis; Psort location: CytoplasmicMembrane, score: 9.82.
 
  
 0.594
EDS74973.1
Chain length determinant protein; KEGG: chu:CHU_0880 6.0e-28 wzc; tyrosine-protein kinase K08252; COG: COG3944 Capsular polysaccharide biosynthesis protein; Psort location: CytoplasmicMembrane, score: 9.82.
  
  
 0.539
EDS75391.1
Bacterial sugar transferase; KEGG: bce:BC5270 8.2e-50 undecaprenyl-phosphate galactosephosphotransferase K00996; COG: COG2148 Sugar transferases involved in lipopolysaccharide synthesis; Psort location: CytoplasmicMembrane, score: 9.82.
 
  
 0.482
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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