STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS74389.1Sporulation protein, YlmC/YmxH family; COG: COG1873 Uncharacterized conserved protein; Psort location: Cytoplasmic, score: 8.87. (79 aa)    
Predicted Functional Partners:
EDS74388.1
RNA polymerase sigma-G factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
     0.763
sigE
RNA polymerase sigma-E factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
     0.690
EDS74392.1
Hypothetical protein; KEGG: lwe:lwe2040 1.0e-10 cell division protein DivIVA K01549; COG: COG3599 Cell division initiation protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.648
EDS73819.1
KEGG: oih:OB0074 1.3e-40 stage II sporulation protein E K06382; COG: COG2208 Serine phosphatase RsbU, regulator of sigma subunit; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.646
cotE
Spore coat protein E; COG: NOG09743 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.619
sepF
Hypothetical protein; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA.
       0.574
EDS74386.1
Hypothetical protein; KEGG: ctc:CTC01125 2.7e-10 putative sporulation sigma-E factor processing peptidase K06383; COG: NOG09744 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
       0.561
EDS75788.1
Peptidase, M23 family; KEGG: bas:BUsg310 1.6e-06 yebA; hypothetical 46.7 kD protein in msbB-ruvB; COG: COG0739 Membrane proteins related to metalloendopeptidases.
  
     0.541
EDS74391.1
S4 domain protein; COG: COG2302 Uncharacterized conserved protein, contains S4-like domain; Psort location: Cytoplasmic, score: 8.87.
       0.520
EDS75062.1
Putative septum site-determining protein MinC; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization.
  
     0.505
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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