Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS74399.1Reverse transcriptase (RNA-dependent DNA polymerase); KEGG: pol:Bpro_5394 2.2e-79 RNA-directed DNA polymerase K00986; COG: COG3344 Retron-type reverse transcriptase; Psort location: Cytoplasmic, score: 8.87. (472 aa)    
Predicted Functional Partners:
EDS74400.1
Hypothetical protein; COG: COG4925 Uncharacterized conserved protein.
       0.455
EDS74398.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.442
EDS74401.1
Oxidoreductase, aldo/keto reductase family protein; KEGG: cgl:NCgl1003 6.8e-78 cgl1048; aldo/keto reductase K03378; COG: COG0656 Aldo/keto reductases, related to diketogulonate reductase; Psort location: Cytoplasmic, score: 8.87.
       0.434
EDS74402.1
Flavin reductase; KEGG: btk:BT9727_4666 6.8e-06 NAD(P)H dehydrogenase (quinone) K00355; COG: COG0655 Multimeric flavodoxin WrbA.
       0.413
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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