STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS74478.1Sigma-70, region 4; COG: NOG16920 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87. (139 aa)    
Predicted Functional Partners:
EDS74479.1
Hypothetical protein; COG: NOG21981 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.947
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.816
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.810
EDS74469.1
DNA binding domain, excisionase family.
 
     0.778
EDS75859.1
Hypothetical protein; COG: NOG21981 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.777
EDS73681.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.776
EDS73672.1
DNA binding domain, excisionase family; Psort location: Cytoplasmic, score: 8.87.
 
     0.751
EDS74468.1
DNA binding domain of tn916 integrase; COG: COG4974 Site-specific recombinase XerD; Psort location: Cytoplasmic, score: 8.87; Belongs to the 'phage' integrase family.
 
   
 0.745
EDS74464.1
Hypothetical protein; COG: COG4974 Site-specific recombinase XerD.
 
   
 0.740
EDS73673.1
DNA-binding helix-turn-helix protein; COG: COG2946 Putative phage replication protein RstA; Psort location: Cytoplasmic, score: 8.87.
  
     0.740
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.