STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS74496.1Hypothetical protein; COG: NOG16911 non supervised orthologous group. (242 aa)    
Predicted Functional Partners:
EDS74495.1
Sigma-70 region 2; KEGG: bcz:BCZK3297 5.0e-11 RNA polymerase ECF-type sigma factor K03088; COG: COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
     0.966
EDS74494.1
Hypothetical protein; KEGG: ddi:DDB0190008 0.00012 hypothetical protein K01230; COG: KOG2798 Putative trehalase.
       0.741
EDS74590.1
Hypothetical protein; COG: NOG29223 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.491
sigF
KEGG: hpa:HPAG1_0089 4.4e-23 RNA polymerase sigma-80 factor K00960; COG: COG1191 DNA-directed RNA polymerase specialized sigma subunit; Psort location: Cytoplasmic, score: 9.98; Belongs to the sigma-70 factor family.
  
 
 0.477
sigE
RNA polymerase sigma-E factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
 
 0.477
EDS74478.1
Sigma-70, region 4; COG: NOG16920 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.477
EDS75097.1
Hypothetical protein; COG: COG1476 Predicted transcriptional regulators.
  
    0.448
EDS74591.1
KEGG: lwe:lwe1990 2.0e-48 ABC transporter, ATP-binding protein K06020; COG: COG1131 ABC-type multidrug transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
   
 0.442
nifJ
KEGG: fnu:FN1170 0. pyruvate-flavodoxin oxidoreductase K03737; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score: 8.87.
      
 0.437
EDS74497.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
       0.437
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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