STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS73677.1Acetyltransferase, GNAT family. (217 aa)    
Predicted Functional Partners:
EDS73678.1
Transcriptional regulator, MerR family; KEGG: eci:UTI89_C3737 2.1e-05 yhdM; Zn(II)-responsive regulator of ZntA; COG: COG4978 Transcriptional regulator, effector-binding domain/component; Psort location: Cytoplasmic, score: 8.87.
 
     0.900
bltR
Multidrug-efflux transporter 2 regulator; KEGG: eci:UTI89_C3737 0.00051 yhdM; Zn(II)-responsive regulator of ZntA; COG: COG4978 Transcriptional regulator, effector-binding domain/component; Psort location: Cytoplasmic, score: 8.87.
 
     0.776
ilvA
Threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.
    
  0.704
EDS73676.1
Penicillin amidase; KEGG: lla:L86424 8.1e-59 pacB; penicillin acylase K01434; COG: COG3049 Penicillin V acylase and related amidases.
  
    0.603
EDS73675.1
Hypothetical protein.
       0.533
EDS75976.1
LPXTG-motif cell wall anchor domain protein; KEGG: cpe:CPE1876 3.9e-38 alpha-L-fucosidase K01206; COG: COG3669 Alpha-L-fucosidase; Psort location: Extracellular, score: 9.55.
  
     0.468
EDS75572.1
Hypothetical protein; COG: NOG11764 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.447
EDS73679.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
       0.445
EDS74250.1
COG: COG4709 Predicted membrane protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.438
EDS75013.1
Hypothetical protein; COG: COG1840 ABC-type Fe3+ transport system, periplasmic component.
  
     0.434
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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