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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS73688.1COG: COG3192 Ethanolamine utilization protein; Psort location: CytoplasmicMembrane, score: 9.99. (360 aa)    
Predicted Functional Partners:
EDS73687.1
Hypothetical protein; KEGG: mmy:MSC_0769 0.0030 pcrA; ATP-dependent DNA helicase K03657; COG: COG3210 Large exoproteins involved in heme utilization or adhesion; Psort location: Cytoplasmic, score: 8.87.
       0.773
trpS
tryptophan--tRNA ligase; KEGG: bfs:BF3809 2.6e-133 trpS; tryptophanyl-tRNA synthetase K01867; COG: COG0180 Tryptophanyl-tRNA synthetase; Psort location: Cytoplasmic, score: 9.98; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.594
EDS74552.1
Propanediol utilization protein PduL; Involved in 1,2-propanediol (1,2-PD) degradation by catalyzing the conversion of propanoyl-CoA to propanoyl-phosphate.
 
   
 0.573
Your Current Organism:
Clostridium spiroforme
NCBI taxonomy Id: 428126
Other names: Clostridium spiroforme ATCC 29900, [. spiroforme DSM 1552, [Clostridium] spiroforme DSM 1552
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